7542 RNase_HII_bacteria_HII_likeThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7542	chr_8	RNase_HII_bacteria_HII_like	494075	495193	-	RNase_HII_bacteria_HII_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445582	Thaps7542.2, Thaps7542.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0073

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0112	0.40	0.000000031 43000

Most Highly Correlated Transcripts

bd1306 (bd1306) NA 0.9363	bd718 (bd718) PRK10387 0.9252	bd1863 (bd1863) NA 0.9229	bd211 (bd211) Maf_Ham1 superfamily 0.9086	bd1403 (bd1403) NA 0.9038	bd2028 (bd2028) NA 0.899
bd208 (bd208) DUF3529 0.8984	bd1342 (bd1342) psaL 0.8904	bd1820 (bd1820) Fasciclin 0.8879	bd1037 (bd1037) Ycf66_N 0.883

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNase_HII_bacteria_HII_like		Bacterial Ribonuclease HII-like; This family includes mostly bacterial type 2 RNases H, with some...	cl14782	171.784	5.21E-52	105 - 336	specific	260003
RNase_H_like superfamily		Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of...	-	171.784	5.21E-52	105 - 336	superfamily	265450

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_13470	PHATR_13470	183894	70232	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003723 GO:0004523 GO:0004524 -

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