12662 COG2907
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12662 chr_20 COG2907 643710 647147 - COG2907

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0209

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0130
 0.40

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9003

bd718

(bd718) PRK10387
0.8917

bd950

(bd950) NA
0.8908

bd1893

(bd1893) NA
0.8777

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8752

bd211

(bd211) Maf_Ham1 superfamily
0.8701

bd783

(bd783) Rieske superfamily
0.8644

bd463

(bd463) Aa_trans superfamily
0.858

bd1161

(bd1161) NA
0.8564

bd1214

(bd1214) KISc_C_terminal
0.8509

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. cl19134 69.4471 3.42E-14 72 - 141 specific 257775
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 69.4471 3.42E-14 72 - 141 superfamily 267487
COG2907 Predicted NAD/FAD-binding protein [General function prediction only] - 322.144 1.30E-99 63 - 492 multi-dom 225459
Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer... - 280.675 2.03E-86 655 - 926 multi-dom 225139

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
20365 PHATRDRAFT_29633 PHATRDRAFT_29633 184900 214413 454253 Cre06.g281250.t1.2 AT3G23510.1 323696

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008757 GO:0006118 GO:0008610 GO:0008825 -

GO:0008757

S-adenosylmethionine-dependent methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0008610

lipid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO Category: 
BP

GO:0008825

cyclopropane-fatty-acyl-phospholipid synthase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
GO Category: 
MF

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