12846 SNF2_NThalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
12846	chr_13	SNF2_N	906162	909901	+	SNF2_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447887	Thaps12846.6, Thaps12846.3, Thaps12846.5, Thaps12846.4, Thaps12846.1, Thaps12846.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0089

Most Highly Correlated Transcripts

262611 RabGAP-TBC 0.8956	5961 Nucleotid_trans superfamily 0.8953	35197 CBS_pair_CAP-ED_DUF294_PBI_assoc 0.8925	2587 O-FucT_like 0.8895	263963 Adaptin_N 0.8862	33625 (top3a) TopA 0.8857
8003 PIG-L 0.8856	12645 MYSc 0.8819	32217 MA3 0.8768	31803 MYSc 0.8764

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DEXDc	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	cl17251	93.9412	7.15E-22	94 - 244	specific	238005
DEXDc superfamily	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	93.9412	7.15E-22	94 - 244	superfamily	266587
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	91.5304	3.19E-21	409 - 540	superfamily	238034
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	91.5304	3.19E-21	409 - 540	superfamily	238034
Bromodomain superfamily	Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone...	-	62.2957	2.01E-11	641 - 725	superfamily	261339
SNF2_N	SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes...	-	252.593	5.25E-76	72 - 378	multi-dom	249654

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14180	PHATRDRAFT_14180	137473	101559	451464	Cre10.g430950.t1.1	AT3G19210.2	560615

KEGG

KEGG description	KEGG Pathway
Homologous recombination	map03440

GO Terms

GO:0003677 GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0005524

ATP binding

Details:

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

GO Category:

GO:0008026

ATP-dependent helicase activity

Details:

Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0003676

nucleic acid binding

Details:

Interacting selectively and non-covalently with any nucleic acid.

GO Category:

GO:0004386

helicase activity

Details:

Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details:

Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.

GO Category:

GO:0004787

thiamine-pyrophosphatase activity

Details:

Catalysis of the reaction: TDP + H2O = TMP + phosphate.

GO Category:

GO:0008722

Details:

GO Category:

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details:

Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.

GO Category:

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details:

Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.

GO Category:

GO:0008828

dATP pyrophosphohydrolase activity

Details:

Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.

GO Category:

GO:0016462

pyrophosphatase activity

Details:

Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.

GO Category:

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details:

Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

GO Category:

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details:

Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.

GO Category:

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details:

Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.

GO Category:

12846 SNF2_N
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0005524

GO:0008026

GO:0003676

GO:0004386

GO:0000810

GO:0004787

GO:0008722

GO:0008758

GO:0008796

GO:0008828

GO:0016462

GO:0016818

GO:0019176

GO:0019177

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