9284 CYCc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9284 chr_13 CYCc 13830 15327 - CYCc

Synonyms

NCBI ID Ensembl Genomes exon ID
7450540 Thaps9284.3, Thaps9284.4, Thaps9284.1, Thaps9284.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0499

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0075
 0.50

Most Highly Correlated Transcripts

24575

CYCc
0.8982

30457

SrmB
0.8369

20649

hypothetical protein
0.8212

264494

SIR2 superfamily
0.7931

bd1803

(bd1803) NA
0.7885

11191

hypothetical protein
0.7656

bd1749

(bd1749) NA
0.762

36897

S_TKc
0.7513

270255

(NTT7) hypothetical protein
0.7463

24325

hypothetical protein
0.7458

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 174.69 2.34E-52 196 - 347 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 174.69 2.34E-52 196 - 347 superfamily 264492
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 191.702 1.26E-58 170 - 349 multi-dom 214485

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre07.g348650.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

Add comment

Log in to post comments