9466 DER1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9466	chr_13	DER1 superfamily	496545	497559	-	DER1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446925	Thaps9466.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0052

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0139	0.40	0.0028 1

Most Highly Correlated Transcripts

270222 0.9254	9247 hypothetical protein 0.8838	5293 PRK00772 0.8718	25744 hypothetical protein 0.8714	1889 PRK00529 0.863	1888 hypothetical protein 0.8628
1539 hypothetical protein 0.8616	38964 Chorismate_synthase 0.8607	3588 hypothetical protein 0.8545	4604 hypothetical protein 0.8508

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DER1 superfamily		Der1-like family; The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of...	-	82.3278	5.28E-19	111 - 300	superfamily	266852

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_5466	PHATRDRAFT_5466	270130	167775	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

Not available -

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