5293 PRK00772
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5293 chr_5 PRK00772 820461 832074 - PRK00772

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps5293.3, Thaps5293.2, Thaps5293.1, Thaps5293.5, Thaps5293.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0049

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

269759

hypothetical protein
0.9249

268875

hypothetical protein
0.9162

1539

hypothetical protein
0.9139

21865

hypothetical protein
0.9114

bd258

(bd258) HU
0.9055

33046

PLN02265
0.8972

1889

PRK00529
0.895

24876

hypothetical protein
0.8942

20678

hypothetical protein
0.8929

9037

hypothetical protein
0.8912

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK00772 3-isopropylmalate dehydrogenase; Provisional cl00445 603.246 0 211 - 561 specific 234832
Iso_dh superfamily Isocitrate/isopropylmalate dehydrogenase; Isocitrate/isopropylmalate dehydrogenase. - 603.246 0 211 - 561 superfamily 260425
Kri1_C superfamily KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for... - 112.685 1.03E-29 138 - 209 superfamily 257417
Kri1_C superfamily KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for... - 112.685 1.03E-29 138 - 209 superfamily 257417

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20934 PHATRDRAFT_20934 275954 219152 468689 Cre07.g325400.t1.2 AT1G31180.1 355974

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 GO:0003862 GO:0005737 GO:0009098 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003862

3-isopropylmalate dehydrogenase activity

Details: 
Catalysis of the reaction: 3-carboxy-2-hydroxy-4-methylpentanoate + NAD+ = 3-carboxy-4-methyl-2-oxopentanoate + NADH + H+.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0009098

leucine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid.
GO Category: 
BP

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