9840 MntH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9840 chr_14 MntH superfamily 507217 508991 - MntH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452682 Thaps9840.1, Thaps9840.2, Thaps9840.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0474

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0065
 0.48

Most Highly Correlated Transcripts

bd884

(bd884) NA
0.8902

bd885

(bd885) NA
0.8414

bd1954

(bd1954) NA
0.8318

bd1841

(bd1841) CAP10 superfamily
0.804

bd415

(bd415) arom_aa_hydroxylase superfamily
0.7806

bd693

(bd693) HSF_DNA-bind superfamily
0.7647

bd410

(bd410) HNHc
0.7635

bd764

(bd764) NA
0.7632

bd937

(bd937) Chalcone superfamily
0.7473

bd857

(bd857) NA
0.7369

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MntH superfamily Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] - 257.463 2.53E-79 66 - 441 superfamily 247099
Nramp Natural resistance-associated macrophage protein; The natural resistance-associated macrophage... - 226.661 1.57E-68 92 - 442 multi-dom 250710

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 172829 325037 52098 Cre05.g248300.t1.1 AT1G47240.1 527737

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016020 GO:0003677 GO:0003700 GO:0005634 GO:0006355 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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