9945 TPR_12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9945 chr_14 TPR_12 797019 799936 - TPR_12

Synonyms

NCBI ID Ensembl Genomes exon ID
7451573 Thaps9945.2, Thaps9945.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0320

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0050
 0.45

Most Highly Correlated Transcripts

4062

hypothetical protein
0.7745

36650

hypothetical protein
0.7395

7626

hypothetical protein
0.6776

38231

(PETC2) PRK13474
0.6674

bd539

(bd539) Dynein_light superfamily
0.666

1564

DUF667
0.6646

24870

hypothetical protein
0.6544

11101

TauE
0.62

1373

hypothetical protein
0.6189

6798

PRK06476
0.614

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.5532 5.42E-12 743 - 857 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.5532 5.42E-12 743 - 857 superfamily 238112
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 60.0834 6.87E-11 568 - 645 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 60.0834 6.87E-11 568 - 645 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 60.0834 6.87E-11 568 - 645 multi-dom 257749

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46573 PHATRDRAFT_46573 262070 187077 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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