bd1304 (bd1304) Ycf4Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1304	bd_26x41	(bd1304) Ycf4	4049	4594	+	Ycf4

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0058

Most Highly Correlated Transcripts

ThpsCp066 (ycf4) photosystem I assembly protein Ycf4 1	bd1387 (bd1387) psbE 0.9962	ThpsCp065 (psbE) photosystem II protein V 0.9962	ThpsCp064 (psbF) photosystem II protein VI 0.9934	ThpsCt017 (trnG(ucc)) 0.993	ThpsCp001 (psaA) photosystem I P700 chlorophyll a apoprotein A1 0.9891
ThpsCp063 (psbL) photosystem II protein L 0.9884	ThpsCp062 (psbJ) photosystem II protein J 0.9876	bd2073 (bd2073) psbB 0.981	ThpsCp018 (psbB) photosystem II 47 kDa protein 0.981

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ycf4		Ycf4; This family consists of hypothetical Ycf4 proteins from various chloroplast genomes. It has...	cl03567	287.876	1.27E-99	1 - 180	specific	145503
Ycf4 superfamily		Ycf4; This family consists of hypothetical Ycf4 proteins from various chloroplast genomes. It has...	-	287.876	1.27E-99	1 - 180	superfamily	186577

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	210788	Not available	Not available	ATCG00520.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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