13485 ncs2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13485 chr_23 ncs2 264180 265988 - ncs2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448887 Thaps13485.1, Thaps13485.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0421

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0249
 0.31

Most Highly Correlated Transcripts

260934

PLPDE_IV superfamily
0.9068

269095

AdoMet_MTases
0.8968

bd1839

(bd1839) NA
0.883

20816

PLPDE_IV superfamily
0.8814

bd1835

(bd1835) NA
0.872

bd1756

(bd1756) NA
0.8675

22671

UbiH
0.8541

3906

Mito_carr
0.854

269127

(ACD3) ACAD superfamily
0.8471

23047

hypothetical protein
0.8453

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sulfate_transp superfamily Sulfate transporter family; Mutations in human SLC26A2 lead to several human diseases. - 81.9982 6.12E-17 1 - 443 superfamily 267603
ncs2 uracil-xanthine permease; The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the... - 318.453 1.74E-102 2 - 502 multi-dom 233133

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52619 PHATRDRAFT_52619 175095 320487 203630 Cre10.g442800.t1.1 AT1G49960.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016020 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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