269127 (ACD3) ACAD superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269127 chr_6 (ACD3) ACAD superfamily 1265337 1266926 - ACAD superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442404 Thaps269127.2, Thaps269127.4, Thaps269127.3, Thaps269127.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0424

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0249
 0.31

Most Highly Correlated Transcripts

bd1841

(bd1841) CAP10 superfamily
0.9609

bd410

(bd410) HNHc
0.9557

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9486

32067

PTZ00182
0.948

bd1808

(bd1808) NA
0.936

bd1941

(bd1941) NA
0.9258

23047

hypothetical protein
0.9246

36291

PLN02528
0.9236

35350

PKc_like superfamily
0.9218

3906

Mito_carr
0.9178

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ACAD superfamily Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA... - 510.273 0 1 - 371 superfamily 263927
CaiA Acyl-CoA dehydrogenases [Lipid metabolism] - 332.93 4.89E-111 1 - 374 multi-dom 224871

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20310 PHATRDRAFT_20310 226606 317345 464665 Not available Not available 350120

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003995 GO:0006118 GO:0016491 GO:0016937 GO:0017099 GO:0019109 -

GO:0003995

acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016937

short-branched-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue.
GO Category: 
MF

GO:0017099

very-long-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very long chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22.
GO Category: 
MF

GO:0019109

NA

Details: 
NA
GO Category: 
NA

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