bd2073 (bd2073) psbBThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd2073	bd_26x41	(bd2073) psbB	46181	47748	-	psbB

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0029

Most Highly Correlated Transcripts

ThpsCp018 (psbB) photosystem II 47 kDa protein 1	ThpsCp019 (psbT) photosystem II protein T 0.9874	ThpsCp001 (psaA) photosystem I P700 chlorophyll a apoprotein A1 0.9813	bd1304 (bd1304) Ycf4 0.981	ThpsCp066 (ycf4) photosystem I assembly protein Ycf4 0.981	bd1387 (bd1387) psbE 0.9806
ThpsCp065 (psbE) photosystem II protein V 0.9806	ThpsCt017 (trnG(ucc)) 0.9773	bd1313 (bd1313) psbH 0.9722	ThpsCp021 (psbH) photosystem II protein H 0.9722

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
psbB		photosystem II 47 kDa protein	cl08223	1124.39	0	1 - 504	specific	214350
PSII superfamily		Photosystem II protein; Photosystem II protein.	-	1124.39	0	1 - 504	superfamily	263539

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	210692	Not available	Not available	ATCG00680.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

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