1515 (NIFU_1) NifUThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1515	chr_1	(NIFU_1) NifU	1725127	1725948	+	NifU

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449139	Thaps1515.2, Thaps1515.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0011

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0063	0.47	47 0.059

Most Highly Correlated Transcripts

26991 GRX_GRXh_1_2_like 0.915	36649 SufE superfamily 0.9133	11214 SOUL 0.9084	1520 hypothetical protein 0.9024	9115 DnaJ 0.9019	269624 TIM_phosphate_binding superfamily 0.8996
41655 Chloroa_b-bind 0.8993	261400 NA 0.8975	33353 TRX_family 0.8971	264347 NDUFA9_like_SDR_a 0.8966

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NifU		NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common...	cl00484	103.852	1.87E-28	89 - 156	specific	144628
NifU superfamily		NifU-like domain; This is an alignment of the carboxy-terminal domain. This is the only common...	-	103.852	1.87E-28	89 - 156	superfamily	241897

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46593	PHATRDRAFT_46593	165177	188935	452262	Cre18.g748447.t1.1	AT5G49940.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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