17704 Peptidase_C12 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17704 chr_2 Peptidase_C12 superfamily 611707 612423 + Peptidase_C12 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448696 Thaps17704.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0029

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0244
 0.36

Most Highly Correlated Transcripts

270222

0.9567

4888

hypothetical protein
0.8664

38608

SDR_a5
0.8635

14192

PLN02449
0.8516

5545

hypothetical protein
0.8488

36078

PRX5_like
0.8452

38306

Chloroa_b-bind
0.839

31829

CBS_like
0.8359

bd1327

(bd1327) DnaB
0.8356

9878

hypothetical protein
0.8352

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C12 superfamily Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and... - 185.532 5.69E-58 16 - 233 superfamily 263579

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 129443 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004221 GO:0005622 GO:0006511 -

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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