1785 (Tp_HSF_1.3d) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1785 chr_1 (Tp_HSF_1.3d) HSF_DNA-bind superfamily 2430661 2432423 - HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449059 Thaps1785.3, Thaps1785.4, Thaps1785.1, Thaps1785.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0020

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0092
 0.42

Most Highly Correlated Transcripts

10336

DUF3506 superfamily
0.8144

20899

(Tp_bHLH2_PAS) regulator [Rayko]
0.805

bd651

(bd651) HMGB-UBF_HMG-box
0.798

9688

(Tp_bZIP7a/PAS) regulator [Rayko]
0.7798

2063

hypothetical protein
0.7759

270373

hypothetical protein
0.7748

22548

hypothetical protein
0.7733

bd1091

(bd1091) NA
0.7584

10092

hypothetical protein
0.7449

5866

hypothetical protein
0.7437

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily - 78.6958 130 - 221 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
30969 Not available Not available 305725 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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