18148 Rab
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18148 chr_7 Rab 1879431 1880511 - Rab

Synonyms

NCBI ID Ensembl Genomes exon ID
7443405 Thaps18148.2, Thaps18148.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0146

Most Highly Correlated Transcripts

6288

hypothetical protein
0.8976

8509

hypothetical protein
0.8949

8130

hypothetical protein
0.8948

261829

(DHC1_1) HELICc
0.8858

1000

hypothetical protein
0.8843

5599

HVSL superfamily
0.8834

263002

(Tp_HSF_2.7b) regulator [Rayko]
0.8806

10523

hypothetical protein
0.8802

262632

Glyco_tranf_GTA_type superfamily
0.8793

22804

Delta6-FADS-like
0.8792

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases); Rab GTPases form... cl17170 164.937 9.84E-50 5 - 173 specific 206640
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 164.937 9.84E-50 5 - 173 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 103.887 2.35E-26 4 - 196 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6635 PHATRDRAFT_6635 176283 172578 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0015031 GO:0003924 GO:0003925 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0003925

NA

Details: 
NA
GO Category: 
NA

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