5599 HVSL superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5599	chr_5	HVSL superfamily	1611945	1613411	+	HVSL superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445184	Thaps5599.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0137	0.33	130 41

Most Highly Correlated Transcripts

34590 nt_trans superfamily 0.9088	1101 hypothetical protein 0.902	5778 hypothetical protein 0.8989	4580 FIG superfamily 0.8876	7567 hypothetical protein 0.8834	4333 hypothetical protein 0.8834
18148 Rab 0.8834	3803 hypothetical protein 0.8828	9111 hypothetical protein 0.8828	3206 CAP10 superfamily 0.8815

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HVSL superfamily		Uncharacterized conserved protein; This entry is of proteins of approximately 300 residues...	-	73.1759	6.86E-15	294 - 428	superfamily	255528

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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