PHATRDRAFT_42673 sec23_ustma protein transport protein sec23 (PLN00162)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42673 chr_1 sec23_ustma protein transport protein sec23 (PLN00162) 753422 755839 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0194

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0248
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec23_C C-terminal Actin depolymerization factor-homology domain of Sec23; The C-terminal domain of the... cl15697 221.093 7.14E-68 608 - 728 specific 200443
ADF_gelsolin superfamily Actin depolymerization factor/cofilin- and gelsolin-like domains; Actin depolymerization factor/... - 221.093 7.14E-68 608 - 728 superfamily 265764
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 319.702 6.80E-103 128 - 394 superfamily 260163
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 119.944 9.31E-32 517 - 617 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 119.944 9.31E-32 517 - 617 superfamily 252815
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 91.8054 5.76E-22 413 - 512 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 91.8054 5.76E-22 413 - 512 superfamily 254596
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 80.2976 1.68E-18 61 - 98 superfamily 252812
zf-Sec23_Sec24 superfamily Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the... - 80.2976 1.68E-18 61 - 98 superfamily 252812
PLN00162 transport protein sec23; Provisional - 1316.86 0 5 - 759 multi-dom 215083

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22248 Not available 265625 69678 110979 Cre03.g180850.t1.2 AT2G21630.1 247465

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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