Phatr_hclust_0194 Hierarchical Clustering
Phaeodactylum tricornutum

Cluster Plots

Cluster Plot Conditions Plot Dendrogram

GO Enrichment

GO ID Go Term p-value q-value Cluster
GO:0006164 purine nucleotide biosynthesis 0.000508608 1 Phatr_hclust_0194
GO:0006886 intracellular protein transport 0.00593201 1 Phatr_hclust_0194
GO:0006334 nucleosome assembly 0.00947431 1 Phatr_hclust_0194
GO:0007264 small GTPase mediated signal transduction 0.0160986 1 Phatr_hclust_0194
GO:0006177 GMP biosynthesis 0.0186843 1 Phatr_hclust_0194
GO:0006241 CTP biosynthesis 0.0278985 1 Phatr_hclust_0194
GO:0006183 GTP biosynthesis 0.0278985 1 Phatr_hclust_0194
GO:0006228 UTP biosynthesis 0.0278985 1 Phatr_hclust_0194
GO:0008610 lipid biosynthesis 0.0278985 1 Phatr_hclust_0194
GO:0015031 protein transport 0.0336157 1 Phatr_hclust_0194

Members

PHATRDRAFT_12378 : subfamilymember 9 (DnaJ)
PHATRDRAFT_17401 : dihydrolipoamide s-acetyltransferase (e2 component of pyruvate dehydrogenase complex)isoform cra_a (PDHac_trf_mito)
PHATRDRAFT_42872 : (DUF3419 superfamily)
PHATRDRAFT_2738 : homogentisate solanesyltransferase (PT_UbiA superfamily)
PHATRDRAFT_26256 : adenylosuccinate synthase (AdSS)
PHATRDRAFT_48906 :
PHATRDRAFT_49325 : mgc108224 protein (Trans_IPPS_HT)
PHATRDRAFT_7173 : (Lumazine_synthase-I)
PHATRDRAFT_48517 : sam-dependent methyltransferases (Cfa)
PHATRDRAFT_43701 : (TPR)
PHATRDRAFT_50120 : dpy-30-like protein (Dpy-30 superfamily)
PHATRDRAFT_3664 : morn motif precursor (MORN superfamily)
PHATRDRAFT_45899 : homeodomain protein (Gst)
PHATRDRAFT_43824 : diphosphomevalonate decarboxylase (mevalonate pyrophosphate decarboxylase)
PHATRDRAFT_13833 : cbs domain-containing protein octicosapeptide phox bemp1domain-containing protein (CBS_pair superfamily)
PHATRDRAFT_19604 : dna mismatch repair protein (MutS_V)
PHATRDRAFT_44547 : ankyrin repeat (Pho88 superfamily)
PHATRDRAFT_42497 :
PHATRDRAFT_49374 : replication factor40-kda subunit (PLN03025)
PHATRDRAFT_50493 : (H15)
PHATRDRAFT_27735 : gmp synthase (PLN02347)
PHATRDRAFT_11286 : nucleosome binding protein (HMGB-UBF_HMG-box)
PHATRDRAFT_22677 : degenerative spermatocyte homolog 1 (PLN02579)
PHATRDRAFT_43841 : atpf_neucr atp synthase subunitmitochondrial precursor (Mt_ATP-synt_B superfamily)
PHATRDRAFT_50006 : phytochelatin synthase (Phytochelatin superfamily)
PHATRDRAFT_18239 : chromatin-specific transcription elongation factor fact 140 kda subunit (COG5406)
PHATRDRAFT_42504 : sec14 cytosolic factor (SEC14)
PHATRDRAFT_44882 :
PHATRDRAFT_43251 : adp-ribosylation factor (Arf1_5_like)
PHATRDRAFT_13167 : solute carrier family 35 (UAA)
PHATRDRAFT_31469 : tr4 orphan receptor associated protein tra16
PHATRDRAFT_22797 : duf850 domain protein (DUF106)
PHATRDRAFT_48094 : proteophosphoglycan ppg4
PHATRDRAFT_51169 : gtp-binding nuclear protein ran (PTZ00132)
PHATRDRAFT_44554 : high mobility group (HMGB-UBF_HMG-box)
PHATRDRAFT_18398 : atp synthase gamma subunit (F1-ATPase_gamma)
PHATRDRAFT_41875 : 3-bisphosphate nucleotidase (FIG superfamily)
PHATRDRAFT_42673 : sec23_ustma protein transport protein sec23 (PLN00162)
PHATRDRAFT_16843 : centromere-specific histone h3 (H4 superfamily)
PHATRDRAFT_54086 : atp synthase beta subunit (PRK09280)
PHATRDRAFT_45650 : nuclear pore protein (RanBD_family)
PHATRDRAFT_46969 : cytoplasmicintermediate chain 2 (WD40 superfamily)
PHATRDRAFT_46621 :
PHATRDRAFT_12292 : ribosomal protein l33 (rpmG)
PHATRDRAFT_47749 : chaperone protein (DnaJ)
PHATRDRAFT_31440 : acyl carrier (PP-binding superfamily)
PHATRDRAFT_40952 : (PUB)
PHATRDRAFT_8518 : isoform cra_a (LSm6)
PHATRDRAFT_34124 :
PHATRDRAFT_17728 : helicase smarcad1 (HepA)
PHATRDRAFT_25127 : nucleoside diphosphate kinase b (NDPk_I)
PHATRDRAFT_44691 :
PHATRDRAFT_41092 :
PHATRDRAFT_49279 : (SMC_prok_B)
PHATRDRAFT_33864 : cdp-ethanolamine:dag ethanolamine phosphotransferase (CDP-OH_P_transf superfamily)
PHATRDRAFT_49301 :
PHATRDRAFT_46906 : nup35 protein (RRM_Nup53_like)
PHATRDRAFT_21789 : tcpg_thawet-complex protein 1 subunit gamma (tcp-1-gamma) (cct-gamma) (TCP1_gamma)
PHATRDRAFT_18745 : udp-glucose 6-expressed (PLN02353)
PHATRDRAFT_4014 : peptidase family s49 protein (S49_Sppa_N_C)

Conditions

Condition Condition Difference FDR
Re-illuminated_6h Re-illuminated_6h -0.064 0.749296
Copper_SH Copper_SH 0.258 0.000515464
Green_vs_Red_24h Green_vs_Red_24h 0.071 0.376667
Silver_SH Silver_SH 0.099 0.125
Cadmium_1.2mg Cadmium_1.2mg -0.001 1
BlueLight_24h BlueLight_24h -0.102 0.581579
GreenLight_0.5h GreenLight_0.5h -0.185 0.4709
RedLight_6h RedLight_6h -0.042 0.802968
light_16hr_dark_7.5hr light_16hr_dark_7.5hr 0.000 1
GreenLight_24h GreenLight_24h -0.134 0.217473
light_6hr light_6hr 0.231 0.0911017
dark_8hr_light_3hr dark_8hr_light_3hr 0.270 0.0237931
Blue_vs_Green_6h Blue_vs_Green_6h -0.014 0.866829
Ammonia_SH Ammonia_SH -0.543 0.00154321
Simazine_SH Simazine_SH -0.278 0.000423729
Oil_SH Oil_SH -0.149 0.0257764
Salinity_15ppt_SH Salinity_15ppt_SH 0.121 0.11125
Cadmium_SH Cadmium_SH -0.042 0.602517
Blue_vs_Red_24h Blue_vs_Red_24h 0.103 0.303761
highlight_0to6h highlight_0to6h 0.352 0.000806452
BlueLight_0.5h BlueLight_0.5h -0.322 0.276056
Dispersant_SH Dispersant_SH -0.210 0.00722892
light_16hr_dark_4hr light_16hr_dark_4hr 0.189 0.01
light_15.5hr light_15.5hr 0.501 0.000625
light_10.5hr light_10.5hr -0.035 0.858553
Dispersed_oil_SH Dispersed_oil_SH -0.125 0.0833333
Si_free Si_free -0.061 0.480702
Re-illuminated_0.5h Re-illuminated_0.5h -0.209 0.464923
Mixture_SH Mixture_SH -0.707 0.000357143
Blue_vs_Red_6h Blue_vs_Red_6h -0.088 0.542276
light_16hr_dark_30min light_16hr_dark_30min 0.465 0.000735294
BlueLight_6h BlueLight_6h -0.130 0.189333
highlight_12to48h highlight_12to48h 0.683 0.000555556
RedLight_24h RedLight_24h -0.205 0.027027
Dark_treated Dark_treated -3.147 0.000446429
GreenLight_6h GreenLight_6h -0.116 0.283437
Cadmium_0.12mg Cadmium_0.12mg -0.003 0.944707
Blue_vs_Green_24h Blue_vs_Green_24h 0.032 0.55632
RedLight_0.5h RedLight_0.5h -0.508 0.0153571
Green_vs_Red_6h Green_vs_Red_6h -0.074 0.637739
Re-illuminated_24h Re-illuminated_24h 0.140 0.115823

Motifs

MEME Output