PHATRDRAFT_7349 small nucleolar rnp protein (Gar1 superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_7349	chr_1	small nucleolar rnp protein (Gar1 superfamily)	1066410	1066670	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0243

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0124	0.32	19000 62000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Gar1 superfamily		Gar1/Naf1 RNA binding region; Gar1 is a small nucleolar RNP that is required for pre-mRNA...	-	85.8013	1.44E-22	1 - 86	superfamily	260872

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22276		Not available	267895	261289	218353	Cre13.g567850.t1.2	AT3G03920.1	302836

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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