PHATRDRAFT_25 (COG1204)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_25 chr_1 (COG1204) 1642575 1647921 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0049

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0063
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 72.7552 1.93E-14 960 - 1107 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 72.7552 1.93E-14 960 - 1107 superfamily 266587
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 72.7552 1.93E-14 960 - 1107 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 72.7552 1.93E-14 960 - 1107 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 59.1737 5.02E-10 1261 - 1351 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 59.1737 5.02E-10 1261 - 1351 superfamily 238034
Sec63 Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... cl19361 290.678 5.51E-88 573 - 901 specific 251597
Sec63 superfamily Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... - 106.674 1.43E-24 1462 - 1589 superfamily 267714
Sec63 Sec63 Brl domain; This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl... cl19361 106.674 1.43E-24 1462 - 1589 specific 214946
Sec63 superfamily Sec63 Brl domain; This domain (also known as the Brl domain) is required for assembly of functional... - 106.674 1.43E-24 1462 - 1589 superfamily 267714

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35726 Not available 169804 325319 422149 Cre17.g744147.t1.1 AT2G42270.1 488611

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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