PHATRDRAFT_24886 transcription factor protein (HMGB-UBF_HMG-box)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_24886 chr_1 transcription factor protein (HMGB-UBF_HMG-box) 1834660 1835893 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0027

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0249
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 74.2013 9.79E-18 130 - 195 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 74.2013 9.79E-18 130 - 195 superfamily 260179
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 74.2013 9.79E-18 130 - 195 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 74.2013 9.79E-18 130 - 195 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 269113 2128 59608 Cre11.g481050.t1.2 AT4G23800.2 285400

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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