PHATRDRAFT_54591 (PLN03076)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54591 chr_10 (PLN03076) 508362 515227 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0086
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central... cl00136 215.55 5.17E-63 760 - 962 specific 238100
Sec7 superfamily Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central... - 215.55 5.17E-63 760 - 962 superfamily 260210
Sec7_N superfamily Guanine nucleotide exchange factor in Golgi transport N-terminal; The full-length Sec7 functions... - 160.457 3.90E-44 446 - 625 superfamily 257293
Sec7_N superfamily Guanine nucleotide exchange factor in Golgi transport N-terminal; The full-length Sec7 functions... - 160.457 3.90E-44 446 - 625 superfamily 257293
DUF1981 superfamily Domain of unknown function (DUF1981); Members of this family of functionally uncharacterized... - 102.283 6.01E-25 1321 - 1395 superfamily 204198
DUF1981 superfamily Domain of unknown function (DUF1981); Members of this family of functionally uncharacterized... - 102.283 6.01E-25 1321 - 1395 superfamily 204198
PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional - 599.886 6.26E-180 200 - 1568 multi-dom 215560

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263191 Not available 197921 240607 464442 Cre09.g390319.t1.1 AT4G38200.1 360752

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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