Phatr_hclust_0096 Hierarchical Clustering
Phaeodactylum tricornutum

Cluster Plots

Cluster Plot Conditions Plot Dendrogram

GO Enrichment

GO ID Go Term p-value q-value Cluster
GO:0006270 DNA replication initiation 0.0000203 0.0642559 Phatr_hclust_0096
GO:0009225 nucleotide-sugar metabolism 0.00213465 1 Phatr_hclust_0096
GO:0046080 dUTP metabolism 0.0103729 1 Phatr_hclust_0096
GO:0006334 nucleosome assembly 0.0114974 1 Phatr_hclust_0096
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.0129454 1 Phatr_hclust_0096
GO:0006269 DNA replication, synthesis of RNA primer 0.0206408 1 Phatr_hclust_0096
GO:0000226 microtubule cytoskeleton organization and biogenesis 0.0206408 1 Phatr_hclust_0096
GO:0006260 DNA replication 0.0291705 1 Phatr_hclust_0096
GO:0009186 deoxyribonucleoside diphosphate metabolism 0.0308046 1 Phatr_hclust_0096
GO:0051276 chromosome organization and biogenesis 0.0408655 1 Phatr_hclust_0096

Members

PHATRDRAFT_34908 :
PHATRDRAFT_35545 :
PHATRDRAFT_28445 : h2a histoneprobable (H2A)
PHATRDRAFT_37740 :
PHATRDRAFT_49604 :
PHATRDRAFT_27246 : dna2l protein (AAA_12)
PHATRDRAFT_47152 : rhamnose biosynthetic enzymeexpressed (dTDP_GD_SDR_e)
PHATRDRAFT_45334 :
PHATRDRAFT_7784 : uncharacterized conserved membrane protein
PHATRDRAFT_47314 : (Spc97_Spc98)
PHATRDRAFT_55197 : oligosaccharyl transferase (PMT_2 superfamily)
PHATRDRAFT_51024 : dna-binding horma domain-containing protein (HORMA)
PHATRDRAFT_26948 : (Peptidases_S8_Tripeptidyl_Aminopeptidase_II)
PHATRDRAFT_45071 : dna repair protein rad8 (HELICc)
PHATRDRAFT_42793 :
PHATRDRAFT_52678 : (POLBc_epsilon)
PHATRDRAFT_47887 : proteasome activator subunit 1 (PA28_beta superfamily)
PHATRDRAFT_49526 : (SANT)
PHATRDRAFT_43936 : at hook motif familyexpressed (AAA)
PHATRDRAFT_42726 : ribonucleoside-diphosphate reductase large chain (PLN02437)
PHATRDRAFT_39978 : amino acid transporter (Aa_trans superfamily)
PHATRDRAFT_49527 :
PHATRDRAFT_14994 : glucosamine-fructose-6-phosphate aminotransferase (PTZ00295)
PHATRDRAFT_45915 : rna binding protein
PHATRDRAFT_48206 : exonuclease ib (PIN_EXO1)
PHATRDRAFT_21882 : vacuolar-atpase c subunit (V_ATP_synt_C)
PHATRDRAFT_37268 : (SMC_prok_B)
PHATRDRAFT_51412 : cdc21 protein (MCM)
PHATRDRAFT_34976 : glutathione s-transferase m3 (GST_C_family superfamily)
PHATRDRAFT_28841 : hypothetical maltose o-acetyltransferase (LbH_MAT_GAT)
PHATRDRAFT_22921 : cmp-sialic acid transporter (Nuc_sug_transp)
PHATRDRAFT_46806 : dna primase large subunit (PriL_PriS_Eukaryotic)
PHATRDRAFT_41356 : (DUF2061 superfamily)
PHATRDRAFT_32554 : magnesium-dependent phosphatase 1 (Acid_PPase)
PHATRDRAFT_42788 : (AdoMet_MTases superfamily)
PHATRDRAFT_605 : mitochondrial helicase twinkle (RecA-like_NTPases superfamily)
PHATRDRAFT_45690 : sister chromatid cohesion-related protein (AAA)
PHATRDRAFT_45997 : pyruvate kinase (PLN02461)
PHATRDRAFT_46020 : histone h2a (PLN00157)
PHATRDRAFT_32786 : kelch repeat-containing protein (PLN02193)
PHATRDRAFT_23423 : silicon transporter (Silic_transp superfamily)
PHATRDRAFT_46001 : pyruvate kinase (PLN02461)
PHATRDRAFT_48955 : (Cation_efflux superfamily)
PHATRDRAFT_39307 :
PHATRDRAFT_55090 : silicon transporter (Silic_transp superfamily)
PHATRDRAFT_14988 :
PHATRDRAFT_9344 : cdc45 (cell division cycle 45) (CDC45 superfamily)
PHATRDRAFT_36293 : nuclear protein qri2 (Nse4_C superfamily)
PHATRDRAFT_51230 : fcpf_phatrfucoxanthin-chlorophyll a-c binding proteinchloroplast precursor (PLN00120)
PHATRDRAFT_54591 : (PLN03076)
PHATRDRAFT_25506 : structural maintenance of chromosomes 1 protein (Smc)
PHATRDRAFT_42680 :
PHATRDRAFT_43152 : peptidyl-prolyl cis-transcyclophilin-type (cyclophilin_ABH_like)
PHATRDRAFT_39827 :
PHATRDRAFT_54677 : dpod1_orysj dna polymerase delta catalytic subunit (PTZ00166)
PHATRDRAFT_39306 : ribonucleoside-diphosphatebeta subunit (RNRR2)
PHATRDRAFT_44724 :
PHATRDRAFT_45434 : at5g28840 f7p1_20 (PLN02695)
PHATRDRAFT_44338 : protein with potential galactosyl transferase activity (Glyco_transf_34 superfamily)
PHATRDRAFT_11490 : dna replication licensing factor (MCM)
PHATRDRAFT_47134 :
PHATRDRAFT_46438 : cytochrome p450-like protein (p450 superfamily)
PHATRDRAFT_42697 :
PHATRDRAFT_36907 :
PHATRDRAFT_43037 :
PHATRDRAFT_55198 : oligosaccharyl transferase subunit (PMT_2 superfamily)
PHATRDRAFT_47818 : start domain-containing protein (DUF1336 superfamily)
PHATRDRAFT_32118 : gins complex subunit 3 (GINS_A_psf3)
PHATRDRAFT_48921 :
PHATRDRAFT_50463 : 16isoform cra_c (Peptidase_S28 superfamily)
PHATRDRAFT_12310 : snf2 domain-containing protein helicase domain-containing protein ring finger domain-containing protein (HepA)
PHATRDRAFT_49976 :
PHATRDRAFT_48488 :
PHATRDRAFT_53933 : (ABC_ATPase superfamily)
PHATRDRAFT_37466 : nad dependent epimerase dehydratase family protein (NADB_Rossmann superfamily)
PHATRDRAFT_48481 :
PHATRDRAFT_48795 : silk fibroin
PHATRDRAFT_48150 :
PHATRDRAFT_30461 : sterol delta7 reductase (ERG4_ERG24 superfamily)
PHATRDRAFT_34931 :
PHATRDRAFT_39115 :
PHATRDRAFT_13243 : mini-chromosome maintenance 7 (MCM)
PHATRDRAFT_32557 : cg4050-isoform a (DUF1736 superfamily)
PHATRDRAFT_36771 :
PHATRDRAFT_46446 :
PHATRDRAFT_16286 : mitochondrial carrier (PTZ00169)
PHATRDRAFT_43664 : retinoblastoma-associated protein hec (HEC1)
PHATRDRAFT_35859 :
PHATRDRAFT_15472 : stromal cell-derived factor 2-like 1
PHATRDRAFT_48923 :
PHATRDRAFT_46925 :
PHATRDRAFT_46003 :
PHATRDRAFT_42426 : prolyl 4-hydroxylase alpha subunit (2OG-FeII_Oxy_3 superfamily)
PHATRDRAFT_44821 :
PHATRDRAFT_38049 : capsule polysaccharide export system inner membrane protein
PHATRDRAFT_44850 : pp2c1_yeast protein phosphatase 2c homolog 1 (pp2c-1) (PP2Cc)
PHATRDRAFT_47159 :
PHATRDRAFT_54534 : tba2_pelfatubulin alpha-2 chain (PLN00221)
PHATRDRAFT_51279 : protein kinase domain containing protein (STKc_CDK_like)
PHATRDRAFT_7646 : deoxyuridine 5-triphosphateexpressed (trimeric_dUTPase)
PHATRDRAFT_6554 : (FMN_red superfamily)

Conditions

Condition Condition Difference FDR
Re-illuminated_6h Re-illuminated_6h -0.014 0.95299
Copper_SH Copper_SH 0.351 0.000515464
Green_vs_Red_24h Green_vs_Red_24h 0.064 0.355274
Silver_SH Silver_SH -0.149 0.00338346
Cadmium_1.2mg Cadmium_1.2mg 0.129 0.00104167
BlueLight_24h BlueLight_24h -0.207 0.00128205
GreenLight_0.5h GreenLight_0.5h -1.974 0.000458716
RedLight_6h RedLight_6h 0.252 0.0146825
light_16hr_dark_7.5hr light_16hr_dark_7.5hr 0.000 0.980594
GreenLight_24h GreenLight_24h -0.266 0.000961538
light_6hr light_6hr 0.938 0.000561798
dark_8hr_light_3hr dark_8hr_light_3hr 0.761 0.00060241
Blue_vs_Green_6h Blue_vs_Green_6h -0.160 0.00128205
Ammonia_SH Ammonia_SH -2.419 0.000344828
Simazine_SH Simazine_SH -0.181 0.00508982
Oil_SH Oil_SH -0.225 0.000666667
Salinity_15ppt_SH Salinity_15ppt_SH 0.195 0.0021978
Cadmium_SH Cadmium_SH 0.052 0.429825
Blue_vs_Red_24h Blue_vs_Red_24h 0.123 0.137218
highlight_0to6h highlight_0to6h 0.268 0.000806452
BlueLight_0.5h BlueLight_0.5h -2.645 0.000462963
Dispersant_SH Dispersant_SH -0.385 0.000909091
light_16hr_dark_4hr light_16hr_dark_4hr 0.614 0.000943396
light_15.5hr light_15.5hr 1.358 0.000625
light_10.5hr light_10.5hr 0.930 0.000561798
Dispersed_oil_SH Dispersed_oil_SH -0.202 0.000675676
Si_free Si_free -0.159 0.0333333
Re-illuminated_0.5h Re-illuminated_0.5h -2.386 0.000396825
Mixture_SH Mixture_SH -2.534 0.000357143
Blue_vs_Red_6h Blue_vs_Red_6h -0.343 0.0016129
light_16hr_dark_30min light_16hr_dark_30min 1.233 0.000735294
BlueLight_6h BlueLight_6h -0.091 0.266773
highlight_12to48h highlight_12to48h 0.501 0.000555556
RedLight_24h RedLight_24h -0.330 0.000943396
Dark_treated Dark_treated -3.653 0.000446429
GreenLight_6h GreenLight_6h 0.069 0.441436
Cadmium_0.12mg Cadmium_0.12mg 0.016 0.438889
Blue_vs_Green_24h Blue_vs_Green_24h 0.060 0.0925532
RedLight_0.5h RedLight_0.5h -2.418 0.000555556
Green_vs_Red_6h Green_vs_Red_6h -0.183 0.0327869
Re-illuminated_24h Re-illuminated_24h 0.133 0.0690955

Motifs

MEME Output