PHATRDRAFT_47010 transducin family protein wd-40 repeat family protein (WD40 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47010 chr_12 transducin family protein wd-40 repeat family protein (WD40 superfamily) 169475 172978 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0114

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0089
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... cl00157 42.515 3.57E-05 878 - 907 specific 238122
WW superfamily Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... - 42.515 3.57E-05 878 - 907 superfamily 260224
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 80.4568 1.51E-16 200 - 395 superfamily 238121
ACE1-Sec16-like superfamily Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat... - 68.0532 2.52E-12 564 - 771 superfamily 265457
COG2319 FOG: WD40 repeat [General function prediction only] - 79.3623 1.77E-15 84 - 330 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22963 Not available 261735 253120 467360 Cre12.g522450.t1.2 AT3G63460.3 322106

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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