PHATRDRAFT_47290 23s rrna (uracil-5-)-methyltransferase (rumA)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47290	chr_13	23s rrna (uracil-5-)-methyltransferase (rumA)	199174	200988	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0215

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0075	0.22	12 8200

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AdoMet_MTases superfamily		S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases...	-	43.704	8.28E-05	468 - 604	superfamily	266528
rumA		23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA...	-	118.386	6.76E-29	117 - 597	multi-dom	129571

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22499		Not available	198696	201563	105952	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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