PHATRDRAFT_51073 snare protein (SNC1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_51073 chr_14 snare protein (SNC1) 256550 257338 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0426

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 73.7276 1.99E-17 137 - 192 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 73.7276 1.99E-17 137 - 192 superfamily 250253
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 68.355 1.58E-15 46 - 128 superfamily 258059
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 68.355 1.58E-15 46 - 128 superfamily 258059
SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] - 137.175 3.81E-40 21 - 200 multi-dom 227472

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9617 Not available 178393 283088 373503 Cre17.g728150.t1.2 AT5G58060.1 356041

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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