PHATRDRAFT_48350 (CHD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48350 chr_17 (CHD) 197400 204173 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0385

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0117
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 187.787 1.38E-53 509 - 690 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 187.787 1.38E-53 509 - 690 superfamily 264492
nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes... cl11424 139.382 4.90E-36 1518 - 1763 specific 143587
nitrilase superfamily Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes... - 139.382 4.90E-36 1518 - 1763 superfamily 264361
PDEase_I 3'5'-cyclic nucleotide phosphodiesterase; 3'5'-cyclic nucleotide... - 85.1768 6.24E-18 843 - 1092 multi-dom 109297
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 151.641 7.90E-41 501 - 665 multi-dom 214485

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 188128 Not available 210750 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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