PHATRDRAFT_29885 vitamin b6 biosynthesis protein (pdxS)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_29885	chr_19	vitamin b6 biosynthesis protein (pdxS)	354955	356413	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0245

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0093	0.28	1100 560000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
pdxS		PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in...	cl17186	522.577	0	25 - 307	specific	240078
TIM_phosphate_binding superfamily		TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an...	-	522.577	0	25 - 307	superfamily	266538

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
42612		Not available	268607	180967	426056	Cre15.g643550.t1.2	AT5G01410.1	354828

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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