PHATRDRAFT_43435 cog0457: fog: tpr repeat (COG4976)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43435 chr_2 cog0457: fog: tpr repeat (COG4976) 451921 453660 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0124

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0184
 0.27

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 44.6784 4.57E-06 25 - 136 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 44.6784 4.57E-06 25 - 136 superfamily 238112
AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... cl17173 44.3431 5.29E-06 279 - 379 specific 100107
AdoMet_MTases superfamily S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... - 44.3431 5.29E-06 279 - 379 superfamily 266528
TPR_11 TPR repeat; TPR repeat. - 43.8415 7.25E-06 75 - 139 multi-dom 257739
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 35.0454 0.00487921 25 - 107 multi-dom 257749
COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] - 150.699 1.07E-41 193 - 450 multi-dom 227310

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
21311 Not available 194859 257577 Not available Not available Not available 498629

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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