PHATRDRAFT_32836 (RRM_Nop6)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_32836	chr_2	(RRM_Nop6)	909853	910786	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0205

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0237	0.20	120 170

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_Nop6		RNA recognition motif in Saccharomyces cerevisiae nucleolar protein 6 (Nop6) and similar proteins;...	cl17169	103.583	8.11E-28	143 - 224	specific	240846
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	103.583	8.11E-28	143 - 224	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	65.3534	2.16E-12	142 - 236	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22690		Not available	150968	205367	95191	Not available	Not available	475091

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments