PHATRDRAFT_25420 rna polymeraseii and iia subunit (PLN03111)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_25420 chr_2 rna polymeraseii and iia subunit (PLN03111) 1057766 1058452 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0144

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0256
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain; The assembly domain of Rpb5. The archaeal equivalent to... cl00883 134.943 2.25E-40 155 - 228 specific 250431
RNA_pol_Rpb5_C superfamily RNA polymerase Rpb5, C-terminal domain; The assembly domain of Rpb5. The archaeal equivalent to... - 134.943 2.25E-40 155 - 228 superfamily 260678
RNA_pol_Rpb5_N superfamily RNA polymerase Rpb5, N-terminal domain; Rpb5 has a bipartite structure which includes a eukaryote-... - 92.3256 6.51E-24 29 - 112 superfamily 252217
RNA_pol_Rpb5_N superfamily RNA polymerase Rpb5, N-terminal domain; Rpb5 has a bipartite structure which includes a eukaryote-... - 92.3256 6.51E-24 29 - 112 superfamily 252217
PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional - 328.396 2.23E-114 26 - 228 multi-dom 215582

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268816 Not available 271383 301163 430670 Cre09.g403219.t1.1 AT3G22320.1 494802

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments