268816 (RPB5) PLN03111
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268816 chr_5 (RPB5) PLN03111 167152 168414 - PLN03111

Synonyms

NCBI ID Ensembl Genomes exon ID
7447258 Thaps268816.2, Thaps268816.3, Thaps268816.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0273

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9114

8498

Ribosomal_L9_N
0.9037

19158

GRX_PICOT_like
0.9003

33995

DUF1077
0.8921

42652

DRG
0.8888

39536

Zn-ribbon_RPB9
0.8886

5806

TIM_phosphate_binding superfamily
0.8886

36476

WD40 superfamily
0.8864

19928

(RL20) Ribosomal_L20
0.8855

37118

FeThRed_B
0.8847

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain; The assembly domain of Rpb5. The archaeal equivalent to... cl00883 135.328 1.33E-40 153 - 226 specific 250431
RNA_pol_Rpb5_C superfamily RNA polymerase Rpb5, C-terminal domain; The assembly domain of Rpb5. The archaeal equivalent to... - 135.328 1.33E-40 153 - 226 superfamily 260678
RNA_pol_Rpb5_N superfamily RNA polymerase Rpb5, N-terminal domain; Rpb5 has a bipartite structure which includes a eukaryote-... - 85.0068 3.30E-21 27 - 111 superfamily 252217
RNA_pol_Rpb5_N superfamily RNA polymerase Rpb5, N-terminal domain; Rpb5 has a bipartite structure which includes a eukaryote-... - 85.0068 3.30E-21 27 - 111 superfamily 252217
PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional - 329.167 1.31E-114 22 - 226 multi-dom 215582

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25420 PHATRDRAFT_25420 271383 301163 430670 Cre09.g403219.t1.1 AT3G22320.1 494802

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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