PHATRDRAFT_9896 (AFD_class_I superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_9896	chr_2	(AFD_class_I superfamily)	1125598	1127169	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0046

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0043	0.34	0.000000024 16000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AFD_class_I superfamily		Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the...	-	534.507	0	17 - 509	superfamily	266508
CaiC		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites...	-	416.477	1.64E-139	15 - 519	multi-dom	223395

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
262283		Not available	278601	241182	416064	Cre03.g211745.t1.1	AT3G21240.1	334746

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments