PHATRDRAFT_25506 structural maintenance of chromosomes 1 protein (Smc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_25506 chr_2 structural maintenance of chromosomes 1 protein (Smc) 1337862 1341963 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0176
 0.24

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC1_euk ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of chromosomes... cl17201 203.188 1.38E-58 6 - 158 specific 213242
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 203.188 1.38E-58 6 - 158 superfamily 266551
ABC_SMC1_euk ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of chromosomes... cl17201 203.188 1.38E-58 6 - 158 specific 213242
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 203.188 1.38E-58 6 - 158 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This entry represents the hinge region of the SMC (Structural... cl05797 122.339 7.48E-32 522 - 641 specific 214944
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 122.339 7.48E-32 522 - 641 superfamily 262671
ApoLp-III_like superfamily Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the... - 39.1646 0.00401757 325 - 450 superfamily 267466
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 493.848 2.37E-153 1 - 1221 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35499 Not available 266771 Not available 102015 Not available AT3G54670.1 563203

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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