PHATRDRAFT_15627 ubiquitin-protein ligase (HECTc)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_15627	chr_20	ubiquitin-protein ligase (HECTc)	118067	119014	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0124

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0068	0.33	13 1600

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HECTc		HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds...	cl00077	315.659	9.11E-106	1 - 313	specific	238033
HECTc superfamily		HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds...	-	315.659	9.11E-106	1 - 313	superfamily	260176
HECTc		Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2...	-	303.386	2.63E-101	1 - 312	multi-dom	214523

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
261019		Not available	199811	295109	470202	Cre08.g364550.t1.1	Not available	535457

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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