PHATRDRAFT_48951 tpr domain containing protein (TPR_12)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48951 chr_20 tpr domain containing protein (TPR_12) 126101 127511 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0186

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0122
 0.44

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 45.4488 2.32E-06 203 - 324 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 45.4488 2.32E-06 203 - 324 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 45.4488 2.32E-06 203 - 324 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 45.4488 2.32E-06 203 - 324 superfamily 238112
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 38.127 0.000571478 198 - 289 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 38.127 0.000571478 198 - 289 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 38.127 0.000571478 198 - 289 multi-dom 257749
TPR_11 TPR repeat; TPR repeat. - 34.5967 0.00639241 257 - 322 multi-dom 257739

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
25041 Not available 192815 243118 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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