PHATRDRAFT_39993 ubiquitin-associated ts-n domain-containing (PUB)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_39993	chr_21	ubiquitin-associated ts-n domain-containing (PUB)	539633	540976	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0393

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PUB		PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor...	cl15262	86.282	1.28E-20	28 - 110	specific	198416
PUB superfamily		PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor...	-	86.282	1.28E-20	28 - 110	superfamily	265658
UBQ superfamily		Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins....	-	37.3243	0.000880021	289 - 370	superfamily	260222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
23148		Not available	204759	288896	Not available	Not available	Not available	478118

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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