23148 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23148 chr_6 PUB 1140616 1142880 - PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7442380 Thaps23148.2, Thaps23148.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Most Highly Correlated Transcripts

270222

0.9235

23473

Cupin_8 superfamily
0.8977

1125

N2227 superfamily
0.8877

8544

hypothetical protein
0.8791

6236

COG4976
0.8791

10898

hypothetical protein
0.8763

24729

hypothetical protein
0.8751

41655

Chloroa_b-bind
0.873

260890

MAD
0.8719

22679

CbiO
0.8718

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 95.5268 2.14E-23 196 - 293 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 95.5268 2.14E-23 196 - 293 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_39993 PHATRDRAFT_39993 204759 288896 Not available Not available Not available 478118

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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