PHATRDRAFT_16021 (SmpB)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_16021	chr_22	(SmpB)	347329	347811	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0027

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0004	0.65	290000 320000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SmpB		Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing...	cl00482	150.579	6.99E-47	14 - 133	specific	187755
SmpB superfamily		Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing...	-	150.579	6.99E-47	14 - 133	superfamily	260454

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
261283		Not available	226675	309445	47186	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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