PHATRDRAFT_49481 heterogeneous nuclear ribonucleoprotein a b (RRM)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49481 chr_22 heterogeneous nuclear ribonucleoprotein a b (RRM) 379432 382678 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0046
 0.37

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM RNA recognition motif; RNA recognition motif. cl17169 79.1747 1.73E-17 797 - 871 specific 214636
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 79.1747 1.73E-17 797 - 871 superfamily 266524
TIGR03089 superfamily TIGR03089 family protein; This protein family is found, so far, only in the Actinobacteria (... - 38.986 0.0034106 980 - 1067 superfamily 234106
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 71.1314 1.93E-13 698 - 871 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
21248 Not available 189148 287794 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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