21248 RRM
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21248 chr_2 RRM 843102 846895 + RRM

Synonyms

NCBI ID Ensembl Genomes exon ID
7450233 Thaps21248.1, Thaps21248.4, Thaps21248.3, Thaps21248.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0163

Most Highly Correlated Transcripts

26140

PRP8
0.9085

5780

hypothetical protein
0.901

22922

hypothetical protein
0.895

11261

WD40 superfamily
0.8919

25687

TPR_MLP1_2
0.8892

25811

hypothetical protein
0.8882

25686

Smc
0.8881

5743

BTB
0.8862

5630

Vps51
0.8848

8535

hypothetical protein
0.8841

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM RNA recognition motif; RNA recognition motif. cl17169 76.0931 1.89E-16 816 - 890 specific 214636
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 76.0931 1.89E-16 816 - 890 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 64.583 2.72E-11 755 - 890 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49481 PHATRDRAFT_49481 189148 287794 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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