PHATRDRAFT_50130 at3g05760 f10a16_5 (ZnF_U1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_50130	chr_27	at3g05760 f10a16_5 (ZnF_U1)	141312	142094	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0301

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0001	0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ZnF_U1 superfamily		U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear...	-	51.4843	2.33E-09	116 - 145	superfamily	197732
ZnF_U1 superfamily		U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear...	-	51.4843	2.33E-09	116 - 145	superfamily	197732

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
11166		Not available	269649	320780	211053	Cre07.g341650.t1.2	AT3G05760.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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