PHATRDRAFT_30965 radical samcfr familyexpressed (COG0820)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_30965 chr_27 radical samcfr familyexpressed (COG0820) 356611 358055 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0200

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0154
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 47.7134 1.14E-06 137 - 267 superfamily 100105
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 47.7134 1.14E-06 137 - 267 superfamily 100105
DRE_TIM_metallolyase superfamily DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate... - 256.587 9.13E-82 86 - 375 superfamily 267315
COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] - 286.516 2.09E-93 90 - 364 multi-dom 223890

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 223610 234404 Not available Cre01.g028450.t1.2 AT3G19630.1 468167

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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