PHATRDRAFT_24019 transcriptional co-repressor sin3a isoform 6 (Sin3_corepress)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_24019 chr_29 transcriptional co-repressor sin3a isoform 6 (Sin3_corepress) 191978 193524 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0396

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0149
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sin3_corepress Sin3 family co-repressor; This domain is found on transcriptional regulators. It forms interactions... cl07053 114.3 6.71E-31 347 - 414 specific 254714
Sin3_corepress superfamily Sin3 family co-repressor; This domain is found on transcriptional regulators. It forms interactions... - 114.3 6.71E-31 347 - 414 superfamily 263157
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 38.6118 0.000260805 276 - 317 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 38.6118 0.000260805 276 - 317 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 38.6118 0.000260805 276 - 317 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 38.6118 0.000260805 276 - 317 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 38.6118 0.000260805 276 - 317 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 38.6118 0.000260805 276 - 317 superfamily 251462

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
23519 Not available 211372 254267 461196 Cre03.g180800.t1.1 AT5G15020.1 297076

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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