PHATRDRAFT_44089 arp1 actin-related protein 1 homologcentractin alpha (ACTIN)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44089	chr_3	arp1 actin-related protein 1 homologcentractin alpha (ACTIN)	933127	934548	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0199

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0078	0.34	48000 29000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NBD_sugar-kinase_HSP70_actin		Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; This superfamily includes...	cl17037	66.8435	2.84E-13	19 - 200	specific	212657
NBD_sugar-kinase_HSP70_actin superfamily		Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; This superfamily includes...	-	66.8435	2.84E-13	19 - 200	superfamily	266502
ACTIN		Actin; ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily	-	467.505	8.10E-164	16 - 389	multi-dom	214592

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
269504		Not available	228346	239296	Not available	Not available	Not available	259446

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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