PHATRDRAFT_44165 (Smc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_44165 chr_3 (Smc) 1166545 1170943 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0097

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0161
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC4_euk ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of chromosomes... cl17201 204.837 2.31E-59 37 - 198 specific 213241
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 204.837 2.31E-59 37 - 198 superfamily 266551
ABC_SMC4_euk ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of chromosomes... cl17201 204.837 2.31E-59 37 - 198 specific 213241
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 204.837 2.31E-59 37 - 198 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... cl05797 106.607 2.36E-26 575 - 686 specific 253749
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 106.607 2.36E-26 575 - 686 superfamily 262671
ApoLp-III_like superfamily Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the... - 40.7054 0.00154315 400 - 543 superfamily 267466
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 525.434 5.24E-164 37 - 1297 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
42365 Not available 212991 Not available 257643 Cre12.g493400.t1.1 AT5G48600.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments