PHATRDRAFT_33610 trna- trna (PcnB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_33610 chr_3 trna- trna (PcnB) 1364662 1366851 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0492

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0026
 0.46

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; CCA-adding enzymes add the... cl11966 108.834 2.16E-27 107 - 309 specific 143388
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 108.834 2.16E-27 107 - 309 superfamily 264491
PolyA_pol_RNAbd superfamily Probable RNA and SrmB- binding site of polymerase A; This region encompasses much of the RNA and... - 40.886 9.85E-05 341 - 400 superfamily 257174
PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] - 125.598 4.18E-31 130 - 477 multi-dom 223690

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
27834 Not available 203942 65334 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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