PHATRDRAFT_24195 (CPSaseII_lrg)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_24195 chr_31 (CPSaseII_lrg) 97309 101876 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0215

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0127
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; This group... cl00020 291.322 2.01E-90 170 - 350 specific 153215
GAT_1 superfamily Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1... - 291.322 2.01E-90 170 - 350 superfamily 260141
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyses... cl17255 303.069 3.26E-94 500 - 704 specific 190425
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 107.388 1.17E-25 1041 - 1240 superfamily 266590
CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain; The carbamoyl-phosphate synthase domain is... cl03056 206.456 5.19E-61 2 - 128 specific 198165
CPSase_sm_chain superfamily Carbamoyl-phosphate synthase small chain, CPSase domain; The carbamoyl-phosphate synthase domain is... - 206.456 5.19E-61 2 - 128 superfamily 261567
CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase... cl19748 171.478 6.98E-49 789 - 915 specific 198164
CPSase_L_D3 superfamily Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate synthase... - 171.478 6.98E-49 789 - 915 superfamily 268101
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 107.388 1.17E-25 1041 - 1240 superfamily 266590
MGS-like superfamily MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which... - 101.993 1.04E-24 1313 - 1425 superfamily 260295

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40323 Not available Not available 234185 422007 Cre08.g358580.t1.1 AT1G29900.1 496117

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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