PHATRDRAFT_17029 rna polymerase sigma factor (Sig70-cyanoRpoD)
Phaeodactylum tricornutum

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_17029 chr_31 rna polymerase sigma factor (Sig70-cyanoRpoD) 187010 187999 +
NCBI ID Ensembl Genomes exon ID
Not available Not available
Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0141
Normalized Mean Residue
Phatr_bicluster_0085
0.45
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... cl17257 54.0326 8.22E-10 255 - 313 specific 100119
Sigma70_r4 superfamily Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... - 54.0326 8.22E-10 255 - 313 superfamily 266592
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 83.3945 1.57E-20 81 - 151 superfamily 252661
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 83.3945 1.57E-20 81 - 151 superfamily 252661
Sigma70_r3 superfamily Sigma-70 region 3; Region 3 forms a discrete compact three helical domain within the sigma-factor.... - 43.7428 4.10E-06 160 - 249 superfamily 146934
Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family; This family includes a number of... - 324.97 5.41E-110 1 - 313 multi-dom 234082
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33682 Not available 208134 234173 442619 Cre03.g194950.t1.1 AT1G08540.1 Not available
KEGG description KEGG Pathway
Not available Not available
Not available -
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